If you accessed a project that has the same name on two different Version Cue Servers, Version Cue may create multiple copies of what appear to be the project’s local project files folder, but which are actually the local project files folders of the two different projects accessed from the different servers. Version Cue names these folders with the project name and a number (for example, project_001, project_002). You can delete these folders after you save versions of your local project files to the Version Cue Server. (Or, you can simply ignore the multiple local project files folders.)
To delete the local project files folders, use Adobe Bridge to disconnect from each project (see Disconnect from projects).